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Creators/Authors contains: "Thomas, F"

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  1. Non-rigid spatial thinking, or mental transformations where the distance between two points in an object changes (e.g., folding, breaking, bending), is required for many STEM fields but remains critically understudied. We developed and tested a non-rigid, ductile spatial skill measure based on reasoning about knots with 279 US adults (M = 30.90, SD 5.47 years; 76% White; 48% women). The resultant 54-item measure had good reliability (α = .88). Next, 147 US adults (M = 20.65, SD 2.80 years; 48% White; 56% women) completed existing spatial skills measures, the knot reasoning measure, a verbal skill measure, and surveys of current and childhood spatial activities. Knot reasoning performance was significantly, positively correlated with existing measures of spatial skill. Mental rotation and paper folding, but not bending, predicted knot reasoning task performance. We replicated work showing that men performed better than women on mental rotation and unexpectedly found that men also outperformed women on paper folding and knot reasoning, but not bending, tasks. Using structural equation modeling, we found several significant mediation effects. Men who reported less masculine-stereotyped spatial activity engagement had higher performance on the mental rotation and knot reasoning tasks. Women who reported greater engagement in feminine-stereotyped spatial activities had higher paper folding and backwards knot reasoning performance. Spatial skills did not differ among math-intensive STEM, non-math-intensive STEM, and non-STEM majors. The studies introduce a reliable measure of non-rigid, ductile string transformations and provide initial evidence of the role of gender and gendered spatial activities on non-rigid spatial skills. 
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  2. ABSTRACT Neuromesodermal progenitors (NMPs) are a vertebrate cell type that contribute descendants to both the spinal cord and the mesoderm. The undifferentiated bipotential NMP state is maintained when both Wnt signaling is active and Sox2 is present. We used transgenic zebrafish reporter lines to live-image both Wnt activity and Sox2 levels in NMPs and observed a unique cellular ratio in NMPs compared to NMP-derived mesoderm or neural tissue. We used this unique signature to identify the previously unknown anatomical position of a progenitor population that gives rise to midline tissues of the floor plate of the spinal cord and the mesodermal notochord. Thus, quantification of the active Wnt signaling to Sox2 ratio can be used to predict and identify cells with neuromesodermal potential. We also developed the auxin-inducible 2 degron system for use in zebrafish to test the temporal role that Sox2 plays during midline formation. We found that ectopic Sox2 in the presence of Wnt activity holds cells in the undifferentiated floor plate/notochord progenitor state, and that degradation of the ectopic Sox2 is required for cells to adopt a notochord fate. 
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  3. Abstract Memristive crossbar architectures are promising as efficient, low-power inference engines for edge AI applications. However, inputs with minor differences often yield similar outputs, requiring additional processing methods such as confidence scoring, feedback mechanisms, crossbar redundancy, or hybrid analog-digital approaches to resolve. These methods can be impractical for resource-limited edge devices. In contrast, three-terminal memtransistors can dynamically tune conductance via gate control, effectively resolving similar outputs and enhancing separability without retraining. Here, we present dense, large-scale crossbar array architectures incorporating up to 2048 MoS2memtransistors per array, achieving >92% yield across multiple arrays while individual memtransistors exhibit write energies as low as ~0.2 fJ, maintain read margins up to 10⁵, and offer a projected retention exceeding three years. These architectures demonstrate the ability to resolve inference ambiguities through gate modulation without the need for costly retraining or reprogramming. We also validate their performance by successfully classifying handwritten digits from the MNIST database. Finally, we benchmark the performance of MoS2memtransistors against other 2D material-based architectures and project their potential compared to state-of-the-art AI accelerators. We believe that this work furthers the ongoing development of in-memory processors for decentralized edge applications and that future studies aimed at reducing device-to-device variation and improving long-term non-volatile memory would only enhance inference capabilities. 
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  4. Channel incision degrades ecosystems by lowering water tables and disconnecting floodplains. Stream restoration often aims to reverse these impacts. However, projects typically receive minimal monitoring, and treatment effectiveness has not been validated. We used trait‐based analysis to evaluate whether two stream restoration techniques—beaver dam analogs (BDAs) and plug‐and‐ponds—raised water tables and increased overbank flooding, whether these altered environmental filters facilitated recovery of riparian plant communities, and how reassembly impacted the representation of traits that influence ecosystem function. We report on a before‐after‐control‐impact study and Bayesian analysis that estimated the probability that treatments affected riparian plant functional diversity and composition. We found a high probability (0.99 and 0.97, respectively) that BDAs decreased functional dispersion by ≥50% and plug‐and‐ponds decreased dispersion by ≥30%. Both treatments increased the relative abundance of high moisture use plants, wetland plants, and plants with high anaerobic tolerance. For example, BDAs increased the relative abundance of obligate wetland plants by 100%, and plug‐and‐ponds increased the relative abundance of facultative wetland plants by 105%, on average. These results suggest treatments modified environmental filters and recovered riparian plant communities. Ecosystem function was likely altered as the streamside plant community reassembled. Small increases in functional divergence suggest both treatments increased resource use efficiency, and we found a high probability of small treatment effect sizes (<20%) related to changes in community‐level C:N and nitrogen fixation. Our results demonstrate trait‐based analysis can detect a rapid response to restoration and offer a cost‐effective monitoring approach to compare treatments across space and time. 
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  5. Gonzalez-Voyer, Alejandro; Rohner, Patrick (Ed.)
    Abstract Phylogenetic comparative methods are a major tool for evaluating macroevolutionary hypotheses. Methods based on the mean-reverting stochastic Ornstein–Uhlenbeck process allow for modelling adaptation on a phenotypic adaptive landscape that itself evolves and where fitness peaks depend on measured characteristics of the external environment and/or other organismal traits. Here, we give an overview of the conceptual framework for the many implementations of these methods and discuss how we might interpret estimated parameters. We emphasize that the ability to model a changing adaptive landscape sets these methods apart from other approaches and discuss why this aspect captures long-term trait evolution more realistically. Recent multivariate extensions of these methods provide a powerful framework for testing evolutionary hypotheses but are also more complicated to use and interpret. We provide some guidance on their usage and put recent literature on the topic in biological rather than mathematical terms. We further show how these methods provide a starting point for modelling reciprocal selection (i.e., coevolution) between interacting lineages. We then briefly review some critiques of the methodologies. Finally, we provide some ideas for future developments that we think will be useful to evolutionary biologists. 
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